If I have two monitors, side by side, then the Unity bar will interfere with mouse movement. I set the unity bar to only display if I move the mouse to the top left corner of the screen, but the mouse still pauses momentarily when I move the mouse from the right display to the left display. The place it pauses, is exactly on the left border of the right screen.
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You must have sticky borders enabled. Remove the option sticky borders.

A similar problem has been answered here: How do I disable mouse magnet on middle edge with multi monitors?