Why is it that in some papers the transition matrix of a continuous-time quantum walk is defined as $\exp(itH)$ and in other papers as $\exp(-itH)$?
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Because the only thing which matters about $i$ is that $i^2=1$. You can always change $i$ to $-i$ as long as you do it consistently. While the convention is to use $e^{-iHt}$ for time evolution, nothing bad will happen if you take the $+$ sign.
Norbert Schuch
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