Is the vacuum empty?
No. Space isn't nothing. See Einstein talking about it here: "This space-time variability of the reciprocal relations of the standards of space and time, or, perhaps, the recognition of the fact that "empty space" in its physical relation is neither homogeneous nor isotropic, compelling us to describe its state by ten functions (the gravitation potentials gmn), has, I think, finally disposed of the view that space is physically empty."
Are virtual particles in the vacuum?
No. Virtual particles are virtual, as in not real. It's a popscience myth that space is full of virtual particles popping in and aout of existence like magic. Vacuum fluctuations are real. They're the electromagnetic equivalent of little ripples on the surface of the sea. But don't think they account for spatial energy. A gravitational field is a place where the spatial energy-density varies, and it isn't because there's more vacuum fluctuations near a star.
Is the vacuum non-zero?
Vacuum energy is non zero.
Is the vacuum empty? How is it not-empty?
It isn't empty because a field has energy, and a field is a state of space. See Einstein talking about that here: "The two types of field are causally linked in this theory, but still not fused to an identity. It can, however, scarcely be imagined that empty space has conditions or states of two essentially different kinds, and it is natural to suspect that this only appears to be so because the structure of the physical continuum is not completely described by the Riemannian metric".
But nobody can it explain serious and simple that I can fully understand it.
I think it's simpler than you think. Just take a look at the stress-energy-momentum tensor:
Public domain image by Maschen, see Wikipedia
Note the shear stress and the pressure, and remember things like "curved spacetime". General relativity kind of treats space like it's some kind of gin-clear ghostly elastic continuum. When you add energy to create a gravitational field, it's a bit like pushing space outwards. IMHO it's like space and energy are the same thing.
Some physicists tell may that virtual particles were a big lie.
They're not a lie, they're just virtual. The lie is the idea that space is full of virtual particles popping in and out of existence.
There don't arises in the vacuum?
No, they're field quanta used to model fields and interactions. See anna's answer to this question. Virtual particles exist only in the mathematics of the model.
What is the truth about the vacuum?
It isn't nothing. Space sustains fields and waves.
What does this paper tells us?
Nothing much. It's speculative.
Is the vacuum empty or not?
No.
Are virtual particles in the vacuum?
No. Just in the maths.
Can a universe arise from nothing?
No. Because even when people say our universe arose from a vacuum fluctuation, something fluctuated.