The fidelity of two quantum states $\rho$ and $\sigma$ is a well-defined (up to discussions about a square):
$$
F(\rho, \sigma) = \left(\text{Tr} \sqrt{ \sqrt{\rho} \sigma \sqrt{\rho}}\right)^2.
$$
Infidelity based error rate
For a noisy quantum channel $\mathcal{E}$ trying to implementing an ideal quantum gate $U$ we can define the gate fidelity $$ F(\mathcal{E}) = \text{min}_{\rho}F( \mathcal{E}(\rho), U\rho U^\dagger). $$
On measure of the error rate is the infidelity defined by $1-F(\mathcal{E})$.
But it seems to me that there are several competing definitions of the (single physical qubit gate) error rate.
Diamond norm based error rate
The starting point for another definition of the error rate $\vert \vert A \vert \vert_1 = \text{Tr}(\sqrt{A A^\dagger})$ is the trace norm.
Another norm is the diamond norm: $$ \vert \vert A \vert \vert_\Diamond = \max_{X \leq 1} \vert \vert (A \otimes 1)X \vert \vert_1 $$ For the noisy channel $\mathcal{E}$ and the ideal channel $\mathcal{E}_U$ defined by $\mathcal{E}_U(\rho)= U \rho U^\dagger.$
We can define a diamond norm based error rate of the channel $\mathcal{E}$ by
$$
d_\Diamond( \mathcal{E} \circ \mathcal{E}_U^{-1}, 1)
$$
My question later is how the error rate is defined and I have a suspension that the error rate may sometimes be defined along the following lines:
Measurement based error rate
I suspect that another definition of the error rate of the channel $\mathcal{E}$ is the following: If we run a noisy (single qubit) channel followed by a measurement in a specified basis I could also define an error rate based on difference to the measurement statistics.
Error correction based error rate
If I measure error-syndromes repeatedly I can look at the rate of errors appearing there and define my error rate from them.
Actual question
In experimental papers such as Suppressing quantum errors by scaling a surface code logical qubit, where they report error rate, what is their definition?
In the paper How to factor 2048 bit RSA integers in 8 hours using 20 million noisy qubits they write:
"Physical gate error rate: The probability that executing a physical gate will introduce Pauli errors onto targeted qubits."
Why is it sensible to restrict oneself only to Pauli errors?