Suppose we have a field theory on Minkowski spacetime. This theory can be quantised in several inequivalent ways:
We can foliate the spacetime into Cauchy hypersurfaces, and write the action in co ordinates of the foliation: $$S=\int dt \int d^3x L(\phi, \partial _{\mu}\phi, t).$$ Then we can switch to the Hamiltonian formulation and impose the CCR. In the Heisenberg picture, this gives us a spacetime dependent quantum field.
Now, the resulting quantum field and the spacetime commutation relations seem to be dependent on the initially chosen foliation of spacetime. But it can be shown (e.g. in this post) that the quantisation is independent of the foliation if the foliation satisfies a certain condition: the normal vector $n^{\mu}$ to the foliation should be future directed and have unit length
So the quantisations that do not satisfy the above condition presumably lead to inequivalent quantum fields, as in the resulting spacetime commutation relations of the inequivalent quantum theories, $f(x,y)=[\phi (x), \phi (y)]$, do not agree.
However, all these inequivalent quantum theories have been derived from the same action. So, on a formal level, their path integral formulations agree.
Where does the inequivalence of these quantisations show up in the path integral formalism?