There exists some discussion on this topic like
Microstates of the system in microcanonical ensemble
Definition of quantum microcanonical ensemble in Landau & Lifshitz
and others but I am still confused of it.
What is a microstate exactly? Microcanonical ensemble assumes (like pathria's book,chapter 5) in energy eigenbasis the density matrix takes the form (in my notation degeneracy contributes a larger $\Gamma$)$$\rho_{mn}=\frac{1}{\Gamma}\delta_{mn}$$
So the first question is: it seems that the natural way to understand a microstate is just a solution of Schrodinger's equation, whose energy expectation value is equal to the given $E_0$.
And the second one: The usual definition is (more or less like) all accessible microstates have the same probability. So why energy is superior? Say, why we don't take the definition:
In eigenbasis of operator $O$, the density matrix takes the form $$\rho_{mn}=\frac{1}{\Gamma}\delta_{mn}$$
Is this because we can't do this, or we can in principle define something like this, energy basis is just some convention, and for each observable operator $O$ like $P$ or $S$, we can define a $(N,V,O)$ ensemble?