I have a bit of confusion because when doing QFT and QFT in curved spaces this particular issue seems to be avoided.
I have this feeling that when we quantize a theory, we somehow choose a chart and we stick to it. This feeling comes from, for example, the way we deal with Lorentz transformations in QFT, namely via unitary representations. In my head, change of coordinates is something more geometrical rather than algebraic as is done in QFT.
I also asked a professor of mine and he told me that the usual way of quantizing things is chart-dependent and then suggested I read TQFT and AQFT papers for which I'm not ready yet. Can someone help me understand? I am searching for a mathematically rigorous construction of the quantization process (in canonical quantization) and if it can be done in a coordinate free way.
Hope my question does make sense.
EDIT:
I think my question was misunderstood: I do believe that, of course, the physics in QFT is Lorentz invariant. But in my understanding of the process of quantization what we are doing mathematically is the following: pick a chart, construct Fock space/Quantize and then model in that Fock space Lorentz transformations via Unitary transformations. In this process, if I take another chart I construct a different (but canonically isomorphic) Fock space. So you see: in QFT (I believe) you don't treat change of chart in a more geometric way, but you model it algebraically.
I think that what I'm saying can be seen in Wightman axioms: there is no reference on the spacetime manifold (of course the choice of the Lorentz Group comes from the isometries of the Minkowski metric but one can avoid talking about the metric completely) , it's purely algebraic. So are Lorentz transformations.