What do physicists mean when they refer to a quantum field theory being unitary? Does this mean that all the symmetry groups of the theory act via unitary representations? I would appreciate if one could provide some references where the definition of a unitary QFT could be found. Especially in the case where there might not be a special direction singled out as "time".
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To expand on @user26374's answer a little, the phrase "A QFT is unitary" comes from the requirement that the $S$-matrix is unitary, i.e. $S S^\dagger = S^\dagger S = 1$ which is equivalent to the statement that sum of probabilities is 1. Unitarity implies several serious constraints on how a QFT can be formulated. For example, unitarity implies the Froissart bound, $\sigma \leq s (\log s)^2$ where $\sigma$ is the total cross-section and $s$ is the center of mass energy. It also implies that the propagator for a field must go no faster than $\frac{1}{p^2}$ at large $p^2$.
Unitarity is discussed in Weinberg Vol. 1.