I have quite a lot of confusion so the question may result not totally clear cause of that. I'll take any advice to improve it and I'll try to be as clear as possible. Everything from now on is what I have understood, so feel free to point out incorrectnesses.
I always considered the electric and magnetic fields $\bf E$ and $\bf B$ as vector fields, with this I mean that for example $E$ is an infinte set of arrows displaced one in each point of space. We represent that as 3-ple of numbers in each point of space.
Then I started to call vectors and vector fields different quantities, quantities that transform in this way under a Lorentz transformation: $A'^\mu = \Lambda^\mu \,_\nu A^\nu$, and I came to discover that neither $\bf E$ nor $\bf B$ transform like the spacial part of a 4-vector. So I wandered, what are they and how do they transform? They are the components of a different objects, the electromagnetic tensor here represented in his matrix form with metric (+---):
$$ F^{\mu \nu} \, = \,\left(\begin{matrix}0 & -E_x & -E_{y} & -E_{z} \\ E_{x} & 0 & -B_{z} & B_{y} \\ E_y & B_{z} & 0 & -B_x \\ E_z & -B_{y} & -B_{x} & 0\end{matrix}\right)\tag{0} $$
So now I see: the components of 3-ple I used to consider are more generally the components of a tensor and transform like the components of a tensor.
Now I can write down the Lorentz force in two different forms:
$$ {\bf F}_L = q ({\bf E} + \frac{{\bf v}}{c} \times {\bf B}) \tag{1}$$
$$ K^\mu = \frac{q}{c} F^{\mu \nu} u_{\nu} \tag{2}$$
The spacial part of the latter equation is
$$ \frac{d \bf p}{ds} = \frac{q}{c} ({\bf E} u^0 + {\bf u} \times {\bf B}) \tag{3}$$
Now on the left hand side I have the spacial part of a 4-vector, while on the right hand side I have those ${\bf E}$ and ${\bf B}$ which aren't spacial parts of 4 vectors. But there are operations between these objects. For example there is a vector product I can write like
$$ {\bf u} \times {\bf B} = \mathcal{\epsilon}_{ijk} u_j B_j \tag{4}$$
Where I have written the components of the covector $u_\mu$ which numerically differs from those of the vector $u^\mu$ just by a minus sign. But has B that property even if it isn't the spacial part of a 4 vector? I mean lowering or raising its index changes its sign?
Considering the $0$-th component of the equation $(2)$ we encounter a scalar product
$$ {\bf E} \cdot {\bf u} = E_x u^1 + E_y u^2 +E_z u^3 \tag{5}$$
What am I doing here? Am I just multiplying two 3-ples of numbers? I could do the same with the spacial part of the covector $u_\mu$
I notice it's unclear what I'm asking, the questions I need an answer to can be
What are $E$ and $B$ mathematically and what is the nature of the mathematical operations involved? What am I doing in $(4)$ and $(5)$ just multiplying and summing numbers?
It's more like a request for a formal mathematical apparatus that relates vectors with n-ples, and $4$-vectors in Minkowski space with what I used to call vectors in $\mathbb{R}^3$?
Any help both in improving the question and in giving some insights are really appreciated.