It is important to specify which multiverse theory one wants to disprove. Some are possible, others are not.
Tegmark's "Level I" model, where the universe is spatially infinite and hence contains regions mirroring our world (and other possible worlds) is falsifiable if we ever find evidence that the universe has a finite volume, for example by detecting a compact topology.
Other inflation domains (Level II) might hypothetically be disproven if we find evidence that chaotic inflation did not take place. The many worlds interpretation of quantum mechanics is in some sense true by definition since it is an interpretation of standard quantum mechanics, so to disprove it would require overturning quantum mechanics. Still, if there is actual wavefunction collapse and it can be observed, that would rule out the MWI - but the experiment looks very hard.
The really radical multiverse models like Tegmark Level IV, Meinong's Jungle or Schmidthuber's computable multiverse are trickier. For any conceivable experiment it seems that there will be worlds showing each possible outcome, so the experiment may not settle anything. Indeed, this problem is a reason many people reject such multiverse theories: there seems to be no way to gather evidence for or against them!
However, there might still be very peculiar methods to investigate them. One is quantum suicide: place yourself in a deadly situation. If you survive against all odds, either there is one universe and you were very lucky, or there is a multiverse and you only experience those worlds where your survival happened. If you repeat the process enough times you will have evidence that there is a multiverse - but only in some very rare branches, in all others your counterparts are dead and mourned (hence, don't do it). This is a weird example where you cannot falsify something, just verify it.
Much here depends on how one defines "probability of finding oneself in world X" or "probability of existing", which has some deep philosophical and mathematical difficulties in some of these theories (e.g. there are no probability spaces that work for Level IV, while there are for the computable multiverse). This also cuts to the core of many debates about the MWI: how do amplitudes turn into observable probabilities for observers in different branches?