There's no such thing as "no resistance" unless your car is in a tank of liquid helium. You're trying to measure resistance in the milliohm range with (I assume) a typical digital multimeter, and that's just not possible. Milliohms matter when you're dealing with heavy currents. As stated above, just a 100 milliohm resistance on each battery cable clamp will give you the voltage drop that you measured.
You're also trying to measure resistance under load, but that load is creating a voltage across your resistance that interferes with the meter's own applied voltage that's used to calculate resistance. That 2 ohm resistance reading will change (possibly to impossible negative resistance) if you reverse the meter's leads, which means that the 2 ohm measurement is invalid.
You can measure actual resistance in the milliohm range by running a known current (amps) through a connection and measuring the voltage in millivolts across the connection. But the current draw of your stalled window motor is unknown. If you follow the procedure in the comment above and assume 25 amps, you'll learn the battery terminal resistance +/- 50% or so.
In order to diagnose the possible alternator issue, you need something like a carbon pile battery tester to create a known and variable amp load for the alternator, a clamp-on DC ammeter and a digital voltmeter.
Before you even go there though, I suggest you measure battery voltage directly on the battery posts during window motor stall. If the battery post voltage is in the 10 volt range with this modest window motor current, you have a bad battery regardless of what the battery tester is saying.
For a proper battery test, fully charge the battery, then subject it to a load of 50% of the battery's CCA. (That's going to be 200-400 amps or so, requiring a carbon pile tester.) Maintain that current for 15 seconds, then measure battery voltage at the last moment of testing. If the battery voltage at that moment is less than about 10.5 volts, depending on temperature, the battery is past its useful life. Electronic battery testers that don't put a heavy amp load on the battery are worse than useless.
Once you know you have a good battery and you have a measured battery cable clamp and ground connection resistance in the low milliohm range, you can start troubleshooting the alternator by placing it under a known amp load at various engine RPM and watching how the voltage changes.