I have the following version of pypy:
HP-Pavilion-15-Notebook-PC:~$ pypy3 --version
Python 3.6.9 (7.3.2+dfsg-2~ppa1~ubuntu20.04, Sep 26 2020, 22:37:47)
[PyPy 7.3.2 with GCC 9.3.0]
I have updated setuptools, as other posts suggested:
HP-Pavilion-15-Notebook-PC:~$ pypy3 -m pip install --upgrade setuptools
Requirement already up-to-date: setuptools in ./.local/lib/pypy3.6/site-packages (50.3.2)
Since pypy didn't run with the apt version of numpy & pandas, I have removed their apt version and installed separately with pip3 install and pypy3 -m install
This worked with numpy, but with pandas I get this extremely lengthy red error message, which I had to partially delete to meet AskUbuntus limits:
HP-Pavilion-15-Notebook-PC:~$ pypy3 -m pip install pandas
Collecting pandas
Using cached pandas-1.1.4.tar.gz (5.2 MB)
Installing build dependencies ... error
ERROR: Command errored out with exit status 1:
command: /usr/bin/pypy3 /usr/lib/python3/dist-packages/pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-aeboyfbp/overlay --no-warn-script-location --no-binary :none: --only-binary :none: -i https://pypi.org/simple -- setuptools wheel 'Cython>=0.29.21,<3' 'numpy==1.15.4; python_version=='"'"'3.6'"'"' and platform_system!='"'"'AIX'"'"'' 'numpy==1.15.4; python_version=='"'"'3.7'"'"' and platform_system!='"'"'AIX'"'"'' 'numpy==1.17.3; python_version=='"'"'3.8'"'"' and platform_system!='"'"'AIX'"'"'' 'numpy==1.16.0; python_version=='"'"'3.6'"'"' and platform_system=='"'"'AIX'"'"'' 'numpy==1.16.0; python_version=='"'"'3.7'"'"' and platform_system=='"'"'AIX'"'"'' 'numpy==1.17.3; python_version=='"'"'3.8'"'"' and platform_system=='"'"'AIX'"'"'' 'numpy; python_version>='"'"'3.9'"'"''
cwd: None
Complete output (721 lines):
Ignoring numpy: markers 'python_version == "3.7" and platform_system != "AIX"' don't match your environment
Ignoring numpy: markers 'python_version == "3.8" and platform_system != "AIX"' don't match your environment
Ignoring numpy: markers 'python_version == "3.6" and platform_system == "AIX"' don't match your environment
Ignoring numpy: markers 'python_version == "3.7" and platform_system == "AIX"' don't match your environment
Ignoring numpy: markers 'python_version == "3.8" and platform_system == "AIX"' don't match your environment
Ignoring numpy: markers 'python_version >= "3.9"' don't match your environment
Collecting setuptools
Using cached setuptools-50.3.2-py3-none-any.whl (785 kB)
Collecting wheel
Using cached wheel-0.35.1-py2.py3-none-any.whl (33 kB)
Collecting Cython<3,>=0.29.21
Using cached Cython-0.29.21-py2.py3-none-any.whl (974 kB)
Collecting numpy==1.15.4
Using cached numpy-1.15.4.zip (4.5 MB)
Building wheels for collected packages: numpy
Building wheel for numpy (setup.py): started
Building wheel for numpy (setup.py): finished with status 'error'
ERROR: Command errored out with exit status 1:
command: /usr/bin/pypy3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-nj0lym2y/numpy/setup.py'"'"'; __file__='"'"'/tmp/pip-install-nj0lym2y/numpy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ciuhckim
cwd: /tmp/pip-install-nj0lym2y/numpy/
Complete output (338 lines):
Running from numpy source directory.
blas_opt_info:
blas_mkl_info:
customize UnixCCompiler
libraries mkl_rt not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
blis_info:
customize UnixCCompiler
libraries blis not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
openblas_info:
customize UnixCCompiler
customize UnixCCompiler
libraries openblas not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_3_10_blas_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
libraries tatlas not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_3_10_blas_info:
customize UnixCCompiler
libraries satlas not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_blas_info:
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
accelerate_info:
NOT AVAILABLE
/tmp/pip-install-nj0lym2y/numpy/numpy/distutils/system_info.py:625: UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
self.calc_info()
blas_info:
customize UnixCCompiler
libraries blas not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
/tmp/pip-install-nj0lym2y/numpy/numpy/distutils/system_info.py:625: UserWarning:
Blas (http://www.netlib.org/blas/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [blas]) or by setting
the BLAS environment variable.
self.calc_info()
blas_src_info:
NOT AVAILABLE
/tmp/pip-install-nj0lym2y/numpy/numpy/distutils/system_info.py:625: UserWarning:
Blas (http://www.netlib.org/blas/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [blas_src]) or by setting
the BLAS_SRC environment variable.
self.calc_info()
NOT AVAILABLE
/bin/sh: 1: svnversion: not found
non-existing path in 'numpy/distutils': 'site.cfg'
/bin/sh: 1: svnversion: not found
F2PY Version 2
lapack_opt_info:
lapack_mkl_info:
customize UnixCCompiler
libraries mkl_rt not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
openblas_lapack_info:
customize UnixCCompiler
customize UnixCCompiler
libraries openblas not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
openblas_clapack_info:
customize UnixCCompiler
customize UnixCCompiler
libraries openblas,lapack not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_3_10_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
libraries tatlas,tatlas not found in /usr/local/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
libraries tatlas,tatlas not found in /usr/lib64
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib64
customize UnixCCompiler
libraries tatlas,tatlas not found in /usr/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib
customize UnixCCompiler
libraries tatlas,tatlas not found in /usr/lib/x86_64-linux-gnu
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
NOT AVAILABLE
atlas_3_10_info:
customize UnixCCompiler
libraries satlas,satlas not found in /usr/local/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
libraries satlas,satlas not found in /usr/lib64
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib64
customize UnixCCompiler
libraries satlas,satlas not found in /usr/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib
customize UnixCCompiler
libraries satlas,satlas not found in /usr/lib/x86_64-linux-gnu
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_3_10_info'>
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in /usr/lib64
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib64
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in /usr/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in /usr/lib/x86_64-linux-gnu
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_threads_info'>
NOT AVAILABLE
atlas_info:
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in /usr/local/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in /usr/lib64
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib64
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in /usr/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in /usr/lib/x86_64-linux-gnu
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_info'>
NOT AVAILABLE
lapack_info:
customize UnixCCompiler
libraries lapack not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
/tmp/pip-install-nj0lym2y/numpy/numpy/distutils/system_info.py:625: UserWarning:
Lapack (http://www.netlib.org/lapack/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [lapack]) or by setting
the LAPACK environment variable.
self.calc_info()
lapack_src_info:
NOT AVAILABLE
/tmp/pip-install-nj0lym2y/numpy/numpy/distutils/system_info.py:625: UserWarning:
Lapack (http://www.netlib.org/lapack/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [lapack_src]) or by setting
the LAPACK_SRC environment variable.
self.calc_info()
NOT AVAILABLE
/usr/lib/pypy3/lib-python/3/distutils/dist.py:261: UserWarning: Unknown distribution option: 'define_macros'
warnings.warn(msg)
running bdist_wheel
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building py_modules sources
creating build
creating build/src.linux-x86_64-3.6
creating build/src.linux-x86_64-3.6/numpy
creating build/src.linux-x86_64-3.6/numpy/distutils
building library "npymath" sources
get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']'
customize Gnu95FCompiler
Found executable /usr/bin/gfortran
customize Gnu95FCompiler
customize Gnu95FCompiler using config
C compiler: gcc -pthread -DNDEBUG -O2 -fPIC
compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/lib/pypy3/include -c'
gcc: _configtest.c
gcc -pthread _configtest.o -o _configtest
success!
removing: _configtest.c _configtest.o _configtest.o.d _configtest
C compiler: gcc -pthread -DNDEBUG -O2 -fPIC
compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/lib/pypy3/include -c'
gcc: _configtest.c
_configtest.c:1:5: warning: conflicting types for built-in function ‘exp’; expected ‘double(double)’ [-Wbuiltin-declaration-mismatch]
1 | int exp (void);
| ^~~
_configtest.c:1:1: note: ‘exp’ is declared in header ‘<math.h>’
+++ |+#include <math.h>
1 | int exp (void);
gcc -pthread _configtest.o -o _configtest
/usr/bin/ld: _configtest.o: in function `main':
_configtest.c:(.text.startup+0x9): undefined reference to `exp'
collect2: error: ld returned 1 exit status
/usr/bin/ld: _configtest.o: in function `main':
_configtest.c:(.text.startup+0x9): undefined reference to `exp'
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o _configtest.o.d
C compiler: gcc -pthread -DNDEBUG -O2 -fPIC
compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/lib/pypy3/include -c'
gcc: _configtest.c
_configtest.c:1:5: warning: conflicting types for built-in function ‘exp’; expected ‘double(double)’ [-Wbuiltin-declaration-mismatch]
1 | int exp (void);
| ^~~
_configtest.c:1:1: note: ‘exp’ is declared in header ‘<math.h>’
+++ |+#include <math.h>
1 | int exp (void);
gcc -pthread _configtest.o -lm -o _configtest
success!
removing: _configtest.c _configtest.o _configtest.o.d _configtest
creating build/src.linux-x86_64-3.6/numpy/core
creating build/src.linux-x86_64-3.6/numpy/core/src
creating build/src.linux-x86_64-3.6/numpy/core/src/npymath
conv_template:> build/src.linux-x86_64-3.6/numpy/core/src/npymath/npy_math_internal.h
adding 'build/src.linux-x86_64-3.6/numpy/core/src/npymath' to include_dirs.
conv_template:> build/src.linux-x86_64-3.6/numpy/core/src/npymath/ieee754.c
conv_template:> build/src.linux-x86_64-3.6/numpy/core/src/npymath/npy_math_complex.c
None - nothing done with h_files = ['build/src.linux-x86_64-3.6/numpy/core/src/npymath/npy_math_internal.h']
building library "npysort" sources
creating build/src.linux-x86_64-3.6/numpy/core/src/npysort
conv_template:> build/src.linux-x86_64-3.6/numpy/core/src/npysort/quicksort.c
conv_template:> build/src.linux-x86_64-3.6/numpy/core/src/npysort/mergesort.c
conv_template:> build/src.linux-x86_64-3.6/numpy/core/src/npysort/heapsort.c
creating build/src.linux-x86_64-3.6/numpy/core/src/private
conv_template:> build/src.linux-x86_64-3.6/numpy/core/src/private/npy_partition.h
adding 'build/src.linux-x86_64-3.6/numpy/core/src/private' to include_dirs.
conv_template:> build/src.linux-x86_64-3.6/numpy/core/src/npysort/selection.c
conv_template:> build/src.linux-x86_64-3.6/numpy/core/src/private/npy_binsearch.h
conv_template:> build/src.linux-x86_64-3.6/numpy/core/src/npysort/binsearch.c
None - nothing done with h_files = ['build/src.linux-x86_64-3.6/numpy/core/src/private/npy_partition.h', 'build/src.linux-x86_64-3.6/numpy/core/src/private/npy_binsearch.h']
building extension "numpy.core._dummy" sources
Generating build/src.linux-x86_64-3.6/numpy/core/include/numpy/config.h
C compiler: gcc -pthread -DNDEBUG -O2 -fPIC
compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/lib/pypy3/include -c'
gcc: _configtest.c
_configtest.c:1:10: fatal error: Python.h: No such file or directory
1 | #include <Python.h>
| ^~~~~~~~~~
compilation terminated.
_configtest.c:1:10: fatal error: Python.h: No such file or directory
1 | #include <Python.h>
| ^~~~~~~~~~
compilation terminated.
failure.
removing: _configtest.c _configtest.o
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-install-nj0lym2y/numpy/setup.py", line 403, in <module>
setup_package()
File "/tmp/pip-install-nj0lym2y/numpy/setup.py", line 395, in setup_package
setup(**metadata)
File "/tmp/pip-install-nj0lym2y/numpy/numpy/distutils/core.py", line 169, in setup
return old_setup(**new_attr)
File "/home/doron/.local/lib/pypy3.6/site-packages/setuptools/__init__.py", line 153, in setup
return distutils.core.setup(**attrs)
File "/usr/lib/pypy3/lib-python/3/distutils/core.py", .....
.....
....
/x86_64-linux-gnu
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_info'>
NOT AVAILABLE
lapack_info:
customize UnixCCompiler
libraries lapack not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
/tmp/pip-install-nj0lym2y/numpy/numpy/distutils/system_info.py:625: UserWarning:
Lapack (http://www.netlib.org/lapack/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [lapack]) or by setting
the LAPACK environment variable.
self.calc_info()
lapack_src_info:
NOT AVAILABLE
/tmp/pip-install-nj0lym2y/numpy/numpy/distutils/system_info.py:625: UserWarning:
Lapack (http://www.netlib.org/lapack/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [lapack_src]) or by setting
the LAPACK_SRC environment variable.
self.calc_info()
NOT AVAILABLE
/usr/lib/pypy3/lib-python/3/distutils/dist.py:261: UserWarning: Unknown distribution option: 'define_macros'
warnings.warn(msg)
running install
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building py_modules sources
building library "npymath" sources
get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']'
customize Gnu95FCompiler
Found executable /usr/bin/gfortran
customize Gnu95FCompiler
customize Gnu95FCompiler using config
C compiler: gcc -pthread -DNDEBUG -O2 -fPIC
compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/lib/pypy3/include -c'
gcc: _configtest.c
gcc -pthread _configtest.o -o _configtest
success!
removing: _configtest.c _configtest.o _configtest.o.d _configtest
C compiler: gcc -pthread -DNDEBUG -O2 -fPIC
compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/lib/pypy3/include -c'
gcc: _configtest.c
_configtest.c:1:5: warning: conflicting types for built-in function ‘exp’; expected ‘double(double)’ [-Wbuiltin-declaration-mismatch]
1 | int exp (void);
| ^~~
_configtest.c:1:1: note: ‘exp’ is declared in header ‘<math.h>’
+++ |+#include <math.h>
1 | int exp (void);
gcc -pthread _configtest.o -o _configtest
/usr/bin/ld: _configtest.o: in function `main':
_configtest.c:(.text.startup+0x9): undefined reference to `exp'
collect2: error: ld returned 1 exit status
/usr/bin/ld: _configtest.o: in function `main':
_configtest.c:(.text.startup+0x9): undefined reference to `exp'
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o _configtest.o.d
C compiler: gcc -pthread -DNDEBUG -O2 -fPIC
compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/lib/pypy3/include -c'
gcc: _configtest.c
_configtest.c:1:5: warning: conflicting types for built-in function ‘exp’; expected ‘double(double)’ [-Wbuiltin-declaration-mismatch]
1 | int exp (void);
| ^~~
_configtest.c:1:1: note: ‘exp’ is declared in header ‘<math.h>’
+++ |+#include <math.h>
1 | int exp (void);
gcc -pthread _configtest.o -lm -o _configtest
success!
removing: _configtest.c _configtest.o _configtest.o.d _configtest
adding 'build/src.linux-x86_64-3.6/numpy/core/src/npymath' to include_dirs.
None - nothing done with h_files = ['build/src.linux-x86_64-3.6/numpy/core/src/npymath/npy_math_internal.h']
building library "npysort" sources
adding 'build/src.linux-x86_64-3.6/numpy/core/src/private' to include_dirs.
None - nothing done with h_files = ['build/src.linux-x86_64-3.6/numpy/core/src/private/npy_partition.h', 'build/src.linux-x86_64-3.6/numpy/core/src/private/npy_binsearch.h']
building extension "numpy.core._dummy" sources
Generating build/src.linux-x86_64-3.6/numpy/core/include/numpy/config.h
C compiler: gcc -pthread -DNDEBUG -O2 -fPIC
compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/lib/pypy3/include -c'
gcc: _configtest.c
_configtest.c:1:10: fatal error: Python.h: No such file or directory
1 | #include <Python.h>
| ^~~~~~~~~~
compilation terminated.
_configtest.c:1:10: fatal error: Python.h: No such file or directory
1 | #include <Python.h>
| ^~~~~~~~~~
compilation terminated.
failure.
removing: _configtest.c _configtest.o
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-install-nj0lym2y/numpy/setup.py", line 403, in <module>
setup_package()
File "/tmp/pip-install-nj0lym2y/numpy/setup.py", line 395, in setup_package
setup(**metadata)
File "/tmp/pip-install-nj0lym2y/numpy/numpy/distutils/core.py", line 169, in setup
return old_setup(**new_attr)
File "/home/doron/.local/lib/pypy3.6/site-packages/setuptools/__init__.py", line 153, in setup
return distutils.core.setup(**attrs)
File "/usr/lib/pypy3/lib-python/3/distutils/core.py", line 148, in setup
dist.run_commands()
File "/usr/lib/pypy3/lib-python/3/distutils/dist.py", line 955, in run_commands
self.run_command(cmd)
File "/usr/lib/pypy3/lib-python/3/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/tmp/pip-install-nj0lym2y/numpy/numpy/distutils/command/install.py", line 62, in run
r = self.setuptools_run()
File "/tmp/pip-install-nj0lym2y/numpy/numpy/distutils/command/install.py", line 36, in setuptools_run
return distutils_install.run(self)
File "/usr/lib/pypy3/lib-python/3/distutils/command/install.py", line 606, in run
self.run_command('build')
File "/usr/lib/pypy3/lib-python/3/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/lib/pypy3/lib-python/3/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/tmp/pip-install-nj0lym2y/numpy/numpy/distutils/command/build.py", line 47, in run
old_build.run(self)
File "/usr/lib/pypy3/lib-python/3/distutils/command/build.py", line 135, in run
self.run_command(cmd_name)
File "/usr/lib/pypy3/lib-python/3/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/lib/pypy3/lib-python/3/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/tmp/pip-install-nj0lym2y/numpy/numpy/distutils/command/build_src.py", line 148, in run
self.build_sources()
File "/tmp/pip-install-nj0lym2y/numpy/numpy/distutils/command/build_src.py", line 165, in build_sources
self.build_extension_sources(ext)
File "/tmp/pip-install-nj0lym2y/numpy/numpy/distutils/command/build_src.py", line 324, in build_extension_sources
sources = self.generate_sources(sources, ext)
File "/tmp/pip-install-nj0lym2y/numpy/numpy/distutils/command/build_src.py", line 377, in generate_sources
source = func(extension, build_dir)
File "numpy/core/setup.py", line 422, in generate_config_h
moredefs, ignored = cocache.check_types(config_cmd, ext, build_dir)
File "numpy/core/setup.py", line 48, in check_types
out = check_types(*a, **kw)
File "numpy/core/setup.py", line 281, in check_types
"install {0}-dev|{0}-devel.".format(python))
SystemError: Cannot compile 'Python.h'. Perhaps you need to install pypy-dev|pypy-devel.
----------------------------------------
ERROR: Command errored out with exit status 1: /usr/bin/pypy3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-nj0lym2y/numpy/setup.py'"'"'; file='"'"'/tmp/pip-install-nj0lym2y/numpy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /tmp/pip-record-pxd1yqyu/install-record.txt --single-version-externally-managed --prefix /tmp/pip-build-env-aeboyfbp/overlay --compile --install-headers /tmp/pip-build-env-aeboyfbp/overlay/include/numpy Check the logs for full command output.
ERROR: Command errored out with exit status 1: /usr/bin/pypy3 /usr/lib/python3/dist-packages/pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-aeboyfbp/overlay --no-warn-script-location --no-binary :none: --only-binary :none: -i https://pypi.org/simple -- setuptools wheel 'Cython>=0.29.21,<3' 'numpy==1.15.4; python_version=='"'"'3.6'"'"' and platform_system!='"'"'AIX'"'"'' 'numpy==1.15.4; python_version=='"'"'3.7'"'"' and platform_system!='"'"'AIX'"'"'' 'numpy==1.17.3; python_version=='"'"'3.8'"'"' and platform_system!='"'"'AIX'"'"'' 'numpy==1.16.0; python_version=='"'"'3.6'"'"' and platform_system=='"'"'AIX'"'"'' 'numpy==1.16.0; python_version=='"'"'3.7'"'"' and platform_system=='"'"'AIX'"'"'' 'numpy==1.17.3; python_version=='"'"'3.8'"'"' and platform_system=='"'"'AIX'"'"'' 'numpy; python_version>='"'"'3.9'"'"'' Check the logs for full command output.
